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  • Jun 11, 2025
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Federal Income Tax Calculation FAQs

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Federal Income Tax Calculation - Common FAQs


How is Federal Income Tax (FIT) calculated?


Federal Income Tax (FIT) is calculated based upon the IRS's Publication 15-T tax tables. Several variables factor into this calculation including the following: 

  • Gross wages
  • Company pay schedule (weekly, bi-weekly, etc) 
  • Employee W-4 elections
  • Pre-tax benefits and deductions

Note: If any of the above factors changes, an employee's FIT will be impacted on subsequent payrolls. 


What should I enter into my W-4?

 

W-4 settings are personal and unique to each employee's personal tax plan! If you aren't sure how to fill out your W-4, the IRS has tools to help employees navigate their tax form.

  • IRS Tax Withholding Estimator for Employees (irs.gov)
  • FAQs about the Form W-4 (irs.gov)

Note: Homebase cannot instruct employees on what they should enter into their W-4 as that would be considered formal tax advice. 


Why isn't FIT being deducted from my paycheck?

 

FIT calculations are based on a combination of all of the above factors. In most cases, employees have $0 deducted for FIT due to a couple of specific variables: 

  • Not enough taxable wages - As a rule of thumb, employees must make greater than the following amounts per week to have FIT deducted. If an employee is making considerably less than these amounts, then they likely will have $0 deducted. 
    • Single or Married Filing Separately - $275/week
    • Married Filing Jointly or Qualifying Widow - $535/week
  • W-4 Settings - As indicated in the "Not enough gross wages" bullet above, employee filing status, dependents deductions, and other W-4 settings cause big impacts to the FIT calculation on payroll
    • The current IRS Form W-4 uses several inputs from the employee to calculate the employee's overall FIT withholding on payroll. 
  • Pre-tax deductions - Benefits and retirement deductions decrease an employee's taxable wages which FIT is calculated on. If an employee has a pre-tax deduction that lowers their taxable wages, they may fall below the FIT calculation threshold and have no FIT calculated on their wages. 
    • Learn more about pre-tax benefits deductions here!

What do these different W-4 settings mean?


Setting Impact on FIT
 Step 1 (c) - Filing Status

 [Highest FIT] Single or Married Filing Separately

 [Mid FIT] Head of Household

 [Lowest FIT] Married Filing Jointly

 Step 2 (c) - Two Jobs Worked 

 [Higher FIT] True

 [Lower FIT] False

 Step 3 - Claim Dependents

 Decreases FIT calculation

 Step 4 (a) - Other Income 

 Increases FIT calculation

 Step 4 (b) - Other Deductions

 Decreases FIT calculation

 Step 4 (c) - Additional Withholding

 Added to calculated FIT

How do I fix it if I've been over/under deducted for FIT?

 

Type of FixOptions
Over-deducted FIT on past payrolls
  • Option 1 - Wait until you receive your W-2 and file your personal tax return. If you were over-deducted for FIT, then your personal tax filing will result in a refund from the IRS. 
  • Option 2  - Reduce your FIT withholding on future payrolls to balance out your tax for the year. You can edit your W-4 settings in your profile to achieve lower FIT calculation on payroll.
Under-deducted FIT on past payrolls
  • Option 1 - Increase your FIT withholding on future payrolls to balance out your tax for the year. You can edit your W-4 settings in your profile to achieve lower FIT calculation on payroll. 
  • Option 2  - Wait until you receive your W-2 and file your personal tax return. If you were under-deducted for FIT, then your personal tax filing will result in an amount owed to the IRS.

URL Name
Federal-Income-Tax-Calculation-on-Payroll

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Federal Income Tax Calculation FAQs