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  • Sep 10, 2026
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How to Run an Off-Cycle Payroll

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How to Run an Off-Cycle Payrolls

You might need to pay your team outside of your regular pay schedule for a variety of reasons, and to do that you can run an off-cycle payroll as opposed to running a regular payroll. There are no extra fees to run an off-cycle payroll.

Off-cycle payrolls (also referred to as custom payrolls or manual payrolls) use the same fields as a regular payroll run (withholding rates, deductions, and contributions). Therefore it is similar to running a regular payroll with the difference being the timing of the run.


What are the reasons I might need to run an off-cycle payroll?

The most common reasons are:

  • Wage correction
    • Forgot to include employee in regular payroll run
    • Failed to include additional pay (tips are a common one)
    • Missed hours for one or more employees on the regular payroll run
  • Adjust salaried employee pay
  • Late payroll run
  • Bonus Pay
  • Holiday Pay
  • Missed pay increases
  • Sick Pay
  • An employee needing to be paid before the next payday
  • Outstanding wages or severance to a terminated employee
  • Wages received from alternate sources (Cashapp, Zelle, Venmo)
  • Reimbursements

Running an Off-Cycle Payroll

  1. Select Run off-cycle payroll from the Pay section located in the top right corner to the right of the gear icon.
  2. Name your off-cycle payroll with a distinguishable title for your records.
  3. Select a reason for Off-Cycle run
  4. Select the payday you want for this particular Off-Cycle run
  5. Select the pay period
  6. Choose the method of hours input
    1. Manually enter hours - Selecting this will allow you to enter a custom amount of hours for this Off-Cycle run
    2. Import time cards from selected pay period - Selecting this will allow you to import the employee’s hours from Homebase timecards. 
  7. Select Withholding Rate
  8. Apply benefits and/or post-tax deductions
  9. Select applicable team members
    1. Note: Gross wages will not be tracked for employees who are skipped during payroll. If you will not be paying employees by direct deposit but still require gross wages tracked, then select "Paper Check."
  10. Manually enter the hours if you chose to do so in step 6. If not, follow the instructions as you would for a regular payroll
  11. Follow stages 3 and 4 and click Submit. 

Off‑Cycle Payrolls and Submission Cutoffs

Off‑cycle payrolls can be created any time you need to pay outside your normal schedule (for example, bonuses, missed hours, or corrections).
Key rules:
  • Direct deposit lead time: Off‑cycle runs follow the same processing timeline as your regular payroll. If you are on 2‑business day processing, choose a pay date that is at least two business days after you submit, and submit before the daily cutoff.
  • Choosing a sooner pay date: If the pay date you want is closer than your standard processing window allows, you have options:
    • Print paper checks and hand them to employees.
    • Contact Support to discuss options for 1-Day payroll processing. Note: You must already be on 2-Day processing to do this.
    • Move the pay date further out to meet the cutoff.
  • Deadlines: Off‑cycle submission cutoffs are the same as scheduled runs (see cutoff examples above). Example: If you submit by Thursday at 7 pm ET, the earliest direct deposit pay date on 2‑business day processing is the following Monday (payrolls do not process on weekends and banking holidays).

URL Name
Off-Cycle-Payroll

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How to Run an Off-Cycle Payroll